Can HumDay connect to MCW Rat Genome Database?

Yes. HumDay reads MCW Rat Genome Database's own published API description and derives the operations from it, so there is no hand-built connector to wait for. 100 operations are documented.

Do I need to write code to automate MCW Rat Genome Database?

No. You describe the outcome you want in plain words. HumDay agrees a contract with you, writes the program, and shows you a test run before anything touches your MCW Rat Genome Database account.

What can HumDay do in MCW Rat Genome Database?

15 of the 100 documented operations change something in MCW Rat Genome Database, and 85 read from it. HumDay only ever uses the specific operations your approved contract needs.

Is my MCW Rat Genome Database account safe?

Your credentials are stored encrypted and are never shown in chat, code, or logs. Every run is limited to the operations you explicitly approved, and anything that writes to MCW Rat Genome Database is held behind that approval.

Automate MCW Rat Genome Database

HumDay reads MCW Rat Genome Database’s own published API description and derives 100 operations from it. Describe the outcome you want in plain words — you get a program that is written, proven on real data, and run for you.

What MCW Rat Genome Database is

The RGD REST API provides programmatic access to information and annotation stored in the Rat Genome Database

What HumDay can do in MCW Rat Genome Database

15 documented operations change something in MCW Rat Genome Database.

POSTReturn a list of genes annotated to an ontology term/annotations/
POSTReturn a list of gene orthologs/genes/orthologs
POSTReturn a list of genes annotated to an ontology term/genes/annotation
POSTReturn a list of genes annotated to the term.Genes are rgdids separated by comma.Species type is an integer value.term is the ontology/enrichment/annotatedGenes
POSTReturn a chart of ontology terms annotated to the genes.Genes are rgdids separated by comma.Species type is an integer value.Aspect is the Ontology group/enrichment/data
POSTTranslate RGD IDs to MGI IDs/lookup/id/map/MGI
POSTTranslate RGD IDs to GTEx IDs/lookup/id/map/GTEx
POSTTranslate RGD IDs to HGNC IDs/lookup/id/map/HGNC
POSTTranslate RGD IDs to UniProt IDs/lookup/id/map/UniProt
POSTTranslate RGD IDs to NCBI Gene IDs/lookup/id/map/NCBIGene
POSTTranslate RGD IDs to Ensembl Gene IDs/lookup/id/map/EnsemblGene
POSTTranslate RGD IDs to Ensembl Protein IDs/lookup/id/map/EnsemblProtein
POSTTranslate RGD IDs to GenBank Protein IDs/lookup/id/map/GenBankProtein
POSTTranslate RGD IDs to Ensembl Transcript IDs/lookup/id/map/EnsemblTranscript
POSTTranslate RGD IDs to GenBank Nucleotide IDs/lookup/id/map/GenBankNucleotide

What HumDay can read from MCW Rat Genome Database

These are the operations a schedule or a trigger can watch.

GETReturns a list of gene types avialable in RGD/lookup/geneTypes
GETGet gene records submitted by RGD to AGR by taxonId/agr/{taxonId}
GETGet a gene record by RGD ID/genes/{rgdId}
GETReturn a list of pathways based on search term/pathways/diagrams/search/{searchString}
GETReturn a list of assemblies/maps/{speciesTypeKey}
GETReturn a list of chromosomes/maps/chr/{mapKey}
GETReturn a list of all genes with position information for an assembly/genes/map/{mapKey}
GETReturn a list of gene alleles/genes/allele/{rgdId}
GETGet gene allele records submitted by RGD to AGR by taxonId/agr/alleles/{taxonId}
GETGet basic variant records submitted by RGD to AGR by taxonId/agr/variants/{taxonId}
GETReturn a list of gene orthologs/genes/orthologs/{rgdId}
GETReturn a list of genes annotated to an ontology term/genes/annotation/{accId}
GETReturns a list ontology term accession IDs annotated to an rgd object/annotations/accId/{rgdId}
GETReturns a list of annotations by RGD ID/annotations/rgdId/{rgdId}
GETReturn a list assembly maps for a species/lookup/maps/{speciesTypeKey}
GETReturn a list of all genes for a species in RGD/genes/species/{speciesTypeKey}
GETReturns a list of annotations for a reference/annotations/reference/{refRgdId}
GETReturn all active strains in RGD/strains/all
GETReturn a list of pathways based on category provided/pathways/diagramsForCategory/{category}
GETReturns a list of annotations by RGD ID and ontology term accession ID/annotations/{accId}/{rgdId}
GETGet a gene record by symbol and species type key/genes/{symbol}/{speciesTypeKey}
GETReturn a Map of species type keys available in RGD/lookup/speciesTypeKeys
GETReturn a QTL for provided RGD ID/qtls/{rgdId}
GETReturn a strain by RGD ID/strains/{rgdId}
GETReturn a list of chromosomes/maps/chr/{chromosome}/{mapKey}
GETReturn a list of genes for an affymetrix ID/genes/affyId/{affyId}/{speciesTypeKey}
GETReturn a list of genes by keyword and species type key/genes/keyword/{keyword}/{speciesTypeKey}
GETReturn a list of genes annotated to an ontology term/genes/annotation/{accId}/{speciesTypeKey}
GETReturns a list of annotations by RGD ID and ontology prefix/annotations/rgdId/{rgdId}/{ontologyPrefix}
GETReturn a list of genes for an alias and species/genes/alias/{aliasSymbol}/{speciesTypeKey}
GETReturns child and parent terms for Accession ID/ontology/ont/{accId}
GETReturns term for Accession ID/ontology/term/{accId}
GETGet expression annotations submitted by RGD to AGR by taxonId/agr/expression/{taxonId}
GETGet phenotype annotations submitted by RGD to AGR by taxonId/agr/phenotypes/{taxonId}
GETReturn a standardUnit for an ontology if it exists/lookup/standardUnit/{accId}
GETGet affected genomic models (rat strains with gene alleles) submitted by RGD to AGR by taxonId/agr/affectedGenomicModels/{taxonId}
GETReturns a list annotations for an ontology term or a term and it's children/annotations/{accId}/{speciesTypeKey}/{includeChildren}
GETReturn a list of quantitative phenotypes values based on a combination of Clinical Measurement, Experimental Condition, Rat Strain, and/or Measurement Method ontology terms./phenotype/phenominer/chart/{speciesTypeKey}/{termString}
GETReturns a list QTL for given position and assembly map/qtls/{chr}/{start}/{stop}/{mapKey}
GETReturn a list of genes position and map key/genes/{chr}/{start}/{stop}/{mapKey}
GETTranslate an RGD ID to an MGI ID/lookup/id/map/MGI/{rgdId}
GETTranslate an RGD ID to an GTEx ID/lookup/id/map/GTEx/{rgdId}
GETTranslate an RGD ID to an HGNC ID/lookup/id/map/HGNC/{rgdId}
GETReturns true or false for terms/ontology/term/{accId1}/{accId2}
GETgetTermStats/stats/term/{accId}/{filterAccId}
GETTranslate an RGD ID to a UniProt ID/lookup/id/map/UniProt/{rgdId}
GETTranslate an RGD ID to an NCBI Gene ID/lookup/id/map/NCBIGene/{rgdId}
GETTranslate an RGD ID to an Ensembl Gene ID/lookup/id/map/EnsemblGene/{rgdId}
GETTranslate an RGD ID to an Ensembl Protein ID/lookup/id/map/EnsemblProtein/{rgdId}
GETTranslate an RGD ID to a GenBank Protein ID/lookup/id/map/GenBankProtein/{rgdId}
GETReturns annotation count for ontology accession ID/annotations/count/{accId}/{includeChildren}
GETTranslate an RGD ID to an Ensembl Transcript ID/lookup/id/map/EnsemblTranscript/{rgdId}
GETTranslate an RGD ID to a GenBank Nucleotide ID/lookup/id/map/GenBankNucleotide/{rgdId}
GETReturns a list QTL for given position and assembly map/qtls/mapped/{chr}/{start}/{stop}/{mapKey}
GETReturn a list of genes position and map key/genes/mapped/{chr}/{start}/{stop}/{mapKey}
GETReturn a list of genes in region/genes/region/{chr}/{start}/{stop}/{mapKey}
GETReturns a list SSLP for given position and assembly map/sslps/mapped/{chr}/{start}/{stop}/{mapKey}
GETReturn a list of quantitative phenotypes values based on a combination of Clinical Measurement, Experimental Condition, Rat Strain, and/or Measurement Method ontology terms./phenotype/phenominer/chart/{speciesTypeKey}/{refRgdId}/{termString}
GETCount of external database ids, for specied species and date/stats/count/xdb/{speciesTypeKey}/{dateYYYYMMDD}
GETCount of gene types, for specified species and date/stats/count/geneType/{speciesTypeKey}/{dateYYYYMMDD}
GETCount of strain types, for specified species and date/stats/count/strainType/{speciesTypeKey}/{dateYYYYMMDD}
GETCount of active objects by type, for specified species and date/stats/count/activeObject/{speciesTypeKey}/{dateYYYYMMDD}
GETCount of objects with given status, for specified species and date/stats/count/objectStatus/{speciesTypeKey}/{dateYYYYMMDD}
GETCount of retired objects by type, for specified species and date/stats/count/retiredObject/{speciesTypeKey}/{dateYYYYMMDD}
GETCount of withdrawn objects by type, for specified species and date/stats/count/withdrawnObject/{speciesTypeKey}/{dateYYYYMMDD}
GETCount of objects with reference sequence(s), by object type, for specified species and date/stats/count/objectWithRefSeq/{speciesTypeKey}/{dateYYYYMMDD}
GETCount of protein interactions, for specified species and date/stats/count/proteinInteraction/{speciesTypeKey}/{dateYYYYMMDD}
GETCount of strains, by qtl inheritance type, for specified species and date/stats/count/qtlInheritanceType/{speciesTypeKey}/{dateYYYYMMDD}
GETCount of objects with reference, by object type, for specified species and date/stats/count/objectWithReference/{speciesTypeKey}/{dateYYYYMMDD}
GETReturn all active strains by position/strains/{chr}/{start}/{stop}/{mapKey}
GETReturns annotation count for ontology accession ID and speicies/annotations/count/{accId}/{speciesTypeKey}/{includeChildren}
GETCount difference of external database ids, for specified species and date range/stats/diff/xdb/{speciesTypeKey}/{dateFromYYYYMMDD}/{dateToYYYYMMDD}
GETCount of objects with external database ids, by database id, for specified species, object type and date/stats/count/objectWithXdb/{speciesTypeKey}/{objectKey}/{dateYYYYMMDD}
GETCount difference of gene types, for specified species and date range/stats/diff/geneType/{speciesTypeKey}/{dateFromYYYYMMDD}/{dateToYYYYMMDD}
GETCount difference of strain types, for specified species and date range/stats/diff/strainType/{speciesTypeKey}/{dateFromYYYYMMDD}/{dateToYYYYMMDD}
GETCount difference of active objects, by type, for specified species and date range/stats/diff/activeObject/{speciesTypeKey}/{dateFromYYYYMMDD}/{dateToYYYYMMDD}
GETCount difference of objects with given status, for specified species and date range/stats/diff/objectStatus/{speciesTypeKey}/{dateFromYYYYMMDD}/{dateToYYYYMMDD}
GETCount difference of retired objects, by type, for specified species and date range/stats/diff/retiredObject/{speciesTypeKey}/{dateFromYYYYMMDD}/{dateToYYYYMMDD}
GETCount difference of withdrawn objects, by type, for specified species and date range/stats/diff/withdrawnObject/{speciesTypeKey}/{dateFromYYYYMMDD}/{dateToYYYYMMDD}
GETCount difference of objects with reference sequence(s), by object type, for specified species and date range/stats/diff/objectWithRefSeq/{speciesTypeKey}/{dateFromYYYYMMDD}/{dateToYYYYMMDD}
GETCount difference of protein interactions, for specified species and date range/stats/diff/proteinInteraction/{speciesTypeKey}/{dateFromYYYYMMDD}/{dateToYYYYMMDD}
GETCount difference of strains, by qtl inheritance type, for specified species and date range/stats/diff/qtlInheritanceType/{speciesTypeKey}/{dateFromYYYYMMDD}/{dateToYYYYMMDD}
GETCount difference of objects with reference, by object type, for specified species and date range/stats/diff/objectWithReference/{speciesTypeKey}/{dateFromYYYYMMDD}/{dateToYYYYMMDD}
GETReturns annotation count for ontology accession ID and object type/annotations/count/{accId}/{speciesTypeKey}/{includeChildren}/{objectType}
GETCount difference of objects with external database ids, by database id, for specified species, object type and date range/stats/diff/objectWithXdb/{speciesTypeKey}/{objectKey}/{dateFromYYYYMMDD}/{dateToYYYYMMDD}

How automating MCW Rat Genome Database works

Describe the outcome. Say what you want to happen, in your own words. No node graphs, no field mapping.
Approve the contract. HumDay writes down exactly what it will do, what it will touch, and what it will never do. You approve it before anything is built.
See it proven. The program runs and shows you the result before it is allowed near your live MCW Rat Genome Database account.
Grant access, then go live. You approve the specific MCW Rat Genome Database operations it may use — and only those.

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