Automate EBI CROssBAR Data
HumDay reads EBI CROssBAR Data’s own published API description and derives 13 operations from it. Describe the outcome you want in plain words — you get a program that is written, proven on real data, and run for you.
What EBI CROssBAR Data is
# About CROssBAR & data **CROssBAR**: Comprehensive Resource of Biomedical Relations with Deep Learning Applications and Knowledge Graph Representations CROssBAR is a comprehensive system that integrates large-scale biomedical data from various resources e.g UniProt, ChEMBL, Drugbank, EFO, HPO, InterPro & PubChem and stores them in a new NoSQL database, enrich these data with deep learning based p
API host: www.ebi.ac.uk
What HumDay can read from EBI CROssBAR Data
These are the operations a schedule or a trigger can watch.
- GETGet EFO diseases data
/efo - GETGet HPO phenotypes data
/hpo - GETdrugs collected from Drugbank
/drugs - GETGet ChEMBL assays
/assays - GETMolecular Interactions collected from IntAct
/intact - GETGet ChEMBL targets
/targets - GETProteins collected from Uniprot for selective tax ids HUMAN(9606), MOUSE(10090), RAT(10116), BOVINE(9913), ESCHERICHIACOLI(83333), SUSSCROFA(9823), MYCOBACTERIUMTUBERCULOSIS(83332…
/proteins - GETGet ChEMBL molecules
/molecules - GETGet ChEMBL activities
/activities - GETGet pubchem bioassays
/pubchem/bioassays - GETGet pubchem compounds
/pubchem/compounds - GETGet pubchem substances
/pubchem/substances - GETGet pubchem bioassays associated to particular substance ids (sid) & outcome
/pubchem/bioassays/sids
How automating EBI CROssBAR Data works
- Describe the outcome. Say what you want to happen, in your own words. No node graphs, no field mapping.
- Approve the contract. HumDay writes down exactly what it will do, what it will touch, and what it will never do. You approve it before anything is built.
- See it proven. The program runs and shows you the result before it is allowed near your live EBI CROssBAR Data account.
- Grant access, then go live. You approve the specific EBI CROssBAR Data operations it may use — and only those.
Automate EBI CROssBAR Data with these
- Monarchinitiative BioLink164 operations
- UniCourt Enterprise158 operations
- OSF APIv2 Documentation156 operations
- IllumiDesk143 operations
- Figshare136 operations
- MCW Rat Genome Database100 operations
- U.S. EPA Enforcement and Compliance History Online (ECHO) Detailed Facility Report (DFR)94 operations
- OpenFEC91 operations
- NBA Stats83 operations
- Thebluealliance The Blue Alliance65 operations
- eDRV57 operations
- Collegefootballdata College Football Data51 operations
Categories
Questions about EBI CROssBAR Data automation
- Can HumDay connect to EBI CROssBAR Data?
- Yes. HumDay reads EBI CROssBAR Data's own published API description and derives the operations from it, so there is no hand-built connector to wait for. 13 operations are documented.
- Do I need to write code to automate EBI CROssBAR Data?
- No. You describe the outcome you want in plain words. HumDay agrees a contract with you, writes the program, and shows you a test run before anything touches your EBI CROssBAR Data account.
- What can HumDay do in EBI CROssBAR Data?
- 0 of the 13 documented operations change something in EBI CROssBAR Data, and 13 read from it. HumDay only ever uses the specific operations your approved contract needs.
- Is my EBI CROssBAR Data account safe?
- Your credentials are stored encrypted and are never shown in chat, code, or logs. Every run is limited to the operations you explicitly approved, and anything that writes to EBI CROssBAR Data is held behind that approval.
Where this came from
The operations above are read from a published API description for EBI CROssBAR Data at www.ebi.ac.uk/Tools/crossbar/v2/api-docs. Descriptions are the provider’s own words, not ours. Last published 2021-06-21.